Cooper, C.J., Khan Mirzaei, M. and Nilsson, AS. (2016). Adapting drug approval pathways for bacteriophage-based therapeutics. Front. Microbiol. 7: 1209.

Khan Mirzaei, M., Haileselassie, Y., Navis, M., Cooper, C., Sverremark-Ekström, E. and Nilsson, AS. (2016). Morphologically distinct Escherichia coli bacteriophages differ in their efficacy and ability to stimulate cytokine release in vitro. Front Microbiol 7: 437.

Eriksson, H., Maciejewska, B., Latka, A., Majkowska-Skrobek, G., Hellstrand, M., Melefors, Ö., Wang, JT., Kropinski, AM., Drulis-Kawa, Z. and Nilsson, AS. (2015). A suggested new bacteriophage genus,“Kp34likevirus”, within the Autographivirinae subfamily of Podoviridae. Viruses, 7(4):1804-1822.

Khan Mirzaei, M. & Nilsson, AS. (2015). Isolation of phages for phage therapy: A comparison of spot tests and efficiency of plating analyses for determination of host range and efficacy. PLoS ONE 10(3): e0118557

Mirzaei, MK., Eriksson, H., Kasuga, K., Haggård-Ljungquist, E. & Nilsson, AS. (2014). Genomic, Proteomic, Morphological, and Phylogenetic Analyses of vB_EcoP_SU10, a Podoviridae Phage with C3 Morphology. PLoS ONE 9(12): e116294.

Nilsson, AS. (2014). Phage therapy—constraints and possibilities. Ups. J. Med. Sci. 119(2): 192-198

Nilsson, H., Cardoso-Palacios, C., Haggård-Ljungquist, E., and Nilsson, AS. (2011). Phylogenetic Structure and Evolution of Regulatory Genes and Integrases of P2-like Phages. Bacteriophage 1(4):207-218.

Lavigne, R., Darius, P., Summer, E., Seto, D., Mahadevan, P., Nilsson, A., Ackermann, H. & Kropinski, A. (2009). Classification of Myoviridae bacteriophages using protein sequence similarity. BMC Microbiol, 9, 224.

Melik, W., Nilsson, AS. & Johansson, M. (2007). Detection strategies of tick-borne encephalitis virus in Swedish Ixodes ricinus reveal evolutionary characteristics of emerging tick-borne flaviviruses. Arch. Virol. 152(5): 1027-1034

Nilsson, AS. & Haggård-Ljunquist, E. (2007). Evolution of P2-like phages and their impact on bacterial evolution. Res Microbiol. 158(4): 311-317.

Karlsson, JL., Cardoso-Palacios, C., Nilsson, AS. & Haggård-Ljunquist, E. (2006). Evolution of immunity and host chromosome integration site of P2-like coliphages. J. Bacteriol. 188(11): 3923-3935.

Odegrip, R., Nilsson, AS., & Haggård-Ljungquist, E. (2006). Identification of a gene encoding a functional reverse transcriptase within a highly variable locus in the P2-like coliphages. J. Bacteriol. 188(4): 1643-1647.

Nilsson, AS & Haggård-Ljungquist, E. (2006). The P2-like bacteriophages. The Bacteriophages / [ed] Richard Calendar, New York: Oxford University Press, p365-390

Li, W., Terenius, O., Hirai, M., Nilsson, AS. & Faye, I. (2005). Cloning, expression and phylogenetic analysis of Hemolin, from the Chinese oak silkmoth, Antheraea pernyi. Dev. Comp. Immunol. 29(10): 853-864.

Nilsson, AS., Karlsson JL., & Haggård-Ljungquist, E. (2004). Site-specific recombination links the evolution of P2-like coliphages and pathogenic enterobacteria. Mol. Biol. Evol. 21(1): 1-13.

Dyrløv Bentsen, J., Nilsson, A. S. and H. Lehnherr. 2002. Phylogenetic and Functional Analysis of the Bacteriophage P1 Single-stranded DNA-binding Protein. J. Virology. 76(19): 9695-9701.

Nilsson, AS., & Haggård-Ljungquist, E. (2001). Detection of homologous recombination among bacteriophage P2 relatives. Mol. Phylogenet. Evol. 21(2): 259-269.