Research project Harnessing evolutionary transitions, machine learning, and genomics to decode pollen

Harnessing evolutionary transitions, machine learning, and genomics to decode pollen evolution and unravel sexual selection mechanisms shared across kingdoms

Successful reproduction requires organisms to invest in a range of sexual traits. As a result, reproduction has a major impact on the way organisms look and function and on how their genomes evolve.

While negotiating reproduction is challenging, this task becomes even more of a challenge during evolutionary transitions, functional shifts with major effects on evolutionary processes. Evolutionary transitions change the rules of the game’ of reproduction, potentially sparking trait innovation and reshaping genomes. In particular, evolutionary transitions can alter the impact of sexual selection, selection which results from differential reproductive success due to variation in mating success. In animals, evolutionary transitions between internal and external fertilization have major effects on the rate and mode of sperm evolution, driven by dilution effects. In flowering plants, evolutionary transitions in pollination mode between insect and wind pollination should incur similar dilution effects, yet we lack robust tests of their impact on pollen evolution. Given widespread gene expression in pollen, shifts in sexual selection due to dilution effects should have marked morphological and genomic impacts, yet these effects remain incompletely characterized. By combining machine learning, computer vision, and state-of-the-art genomic approaches, this project will identify drivers and genomic consequences of pollen evolution in a broad comparative framework, across a range of evolutionary timescales. 

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Department of Ecology, Environment and Plant Sciences

DEEP seeks PhD student in Ecology and Evolution – apply by 22 April!

The Department of Ecology, Environment and Plant Sciences invites applications for a four-year PhD position in the framework of the project “Harnessing evolutionary transitions, machine learning, and genomics to decode pollen evolution and unravel sexual selection mechanisms shared across kingdoms” led by Prof. Tanja Slotte in close collaboration with co-investigators Prof. John Fitzpatrick, Prof. Catarina Rydin, and Dr. Allison Hsiang at Stockholm University. This project will investigate the evolutionary drivers and genomic consequences of pollen evolution in response to shifts in pollination mode in flowering plants. The thesis work will focus on identifying genomic signatures of selection on pollen in relation to evolutionary transitions in pollination mode. The work will involve comparative genomic analyses in a phylogenetic framework, as well as population genomic and transcriptomic analyses in suitable plant systems. The project is funded by the Knut and Alice Wallenberg Foundation. Read more about this opportunity and apply by 22 April: Learn more and apply in English here Learn more and apply in Swedish here

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