Ngara M, Palmkvist M, Sagasser S, Hjelmqvist D, Björklund P K, Wahlgren M, Ankarklev J, Sandberg R
Exploring parasite heterogeneity using single-cell RNA-seq reveals a gene signature among sexual stage Plasmodium falciparum parasites.  Experimental Cell Research, Volume 371, Issue 1, 1 October 2018, Pages 130-138

Ankarklev J, Lebbad M, Einarsson E, Franzén O, Ahola H, Troell K, Svärd SG. (2018) A novel high-resolution multilocus sequence typing of Giardia intestinalis Assemblage A isolates reveals zoonotic transmission, clonal outbreaks and recombination. Infect Genet Evol. 60:7-16

Mantel P-Y, Hjelmqvist D, Walch M, Kharoubi-Hess S, Nilsson S, Ravel D, Ribeiro M, Gruring C, Ma S, Padmanabhan P, Trachtenberg A, Ankarklev J, Brancucci NM, Huttenhower C, Duraisingh MT, Ghiran I, Kuo WP, Filgueira L, Martinelli, Marti M (2016) Infected erythrocyte-derived extracellular vesicles alter vascular function via regulatory Ago2-miRNA complexes in malaria. Nat Commun 7: 12727.

Ankarklev J, Franzen O, Peirasmaki D, Jerlstrom-Hultqvist J, Lebbad M, Andersson J, Andersson B, Svard SG (2015) Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage  A isolates. BMC Genomics 16: 697.

Ankarklev J, Brancucci NMB, Goldowitz I, Mantel P-Y, Marti M (2014) Sex: how malaria parasites get turned on. Curr Biol 24: R368-70.

Ankarklev J, Hjelmqvist D, Mantel PY (2014) Uncovering the role of erythrocyte-derived extracellular vesicles in malaria: from immune regulation to cell communication. Jour Circ Biomark 3: doi 10.5772/58596

Franzen O, Jerlstrom-Hultqvist J, Einarsson E, Ankarklev J, Ferella M, Andersson B, Svard SG (2013) Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq. PLoS Comput Biol 9(3): e1003000.

Ankarklev J, Svard SG, Lebbad M (2012) Allelic sequence heterozygosity in single Giardia parasites. BMC Microbiol 12: 65.

Ankarklev J, Hestvik E, Lebbad M, Lindh J, Kaddu-Mulindwa DH, Andersson JO, Tylleskar T, Tumwine JK, Svard SG (2012) Common coinfections of Giardia intestinalis and Helicobacter pylori in non-symptomatic Ugandan children. PLoS Negl Trop Dis 6: e1780.

Wahab T, Ankarklev J, Lebbad M, Glavas S, Svard S, Palm D (2011) Real-time polymerase chain reaction followed by fast sequencing allows rapid genotyping of microbial pathogens. Scand J Infect Dis 43: 95–99.

Xiao Y, Yin J, Jiang N, Xiang M, Hao L, Lu H, Sang H, Liu X, Xu H, Ankarklev J, Lindh J, Chen Q (2010) Seroepidemiology of human Toxoplasma gondii infection in China. BMC Infect Dis 10: 4.

Jerlstrom-Hultqvist J, Franzen O, Ankarklev J, Xu F, Nohynkova E, Andersson JO, Svard SG, Andersson B (2010) Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate. BMC Genomics 11: 543.

Ankarklev J, Jerlstrom-Hultqvist J, Ringqvist E, Troell K, Svard SG (2010) Behind the smile: cell biology and disease mechanisms of Giardia species. Nat Rev Microbiol 8: 413–422.

Jerlstrom-Hultqvist J, Ankarklev J, Svard SG (2010) Is human giardiasis caused by two different Giardia species? Gut Microbes 1: 379–382.

Brolin KJM, Ribacke U, Nilsson S, Ankarklev J, Moll K, Wahlgren M, Chen Q (2009) Simultaneous transcription of duplicated var2csa gene copies in individual Plasmodium falciparum parasites. Genome Biol 10: R117.

Franzen O, Jerlstrom-Hultqvist J, Castro E, Sherwood E, Ankarklev J, Reiner DS, Palm D, Andersson JO, Andersson B, Svard SG (2009) Draft genome sequencing of giardia intestinalis assemblage B isolate GS: is human giardiasis caused by two different species? PLoS Pathog 5: e1000560.

Reiner DS, Ankarklev J, Troell K, Palm D, Bernander R, Gillin FD, Andersson JO, Svard SG (2008) Synchronisation of Giardia lamblia: identification of cell cycle stage-specific genes and a differentiation restriction point. Int J Parasitol 38: 935–944.

Lebbad M, Ankarklev J, Tellez A, Leiva B, Andersson JO, Svard S (2008) Dominance of Giardia assemblage B in Leon, Nicaragua. Acta Trop 106: 44–53.

Zhu J, Yin J, Xiao Y, Jiang N, Ankarlev J, Lindh J, Chen Q (2008) A sero-epidemiological survey of Toxoplasma gondii infection in free-range and caged chickens in northeast China. Vet Parasitol 158(4):360-3​